gem-hunter
Language: C
PostgreSQL extension adding HyperLogLog data structures as a native data type
This Postgres module introduces a new data type hll which is a HyperLogLog data structure. HyperLogLog is a fixed-size, set-like structure used for distinct value counting with tunable precision. For example, in 1280 bytes hll can estimate the count of tens of billions of distinct values with only a few percent error.
In addition to the algorithm proposed in the original paper, this implementation is augmented to improve its accuracy and memory use without sacrificing much speed. See below for more details.
This postgresql-hll extension was originally developed by the Science team from Aggregate Knowledge, now a part of Neustar. Please see the acknowledgements section below for details about its contributors.
A hll is a combination of different set/distinct-value-counting algorithms that can be thought of as a hierarchy, along with rules for moving up that hierarchy. In order to distinguish between said algorithms, we have given them names:
A constant value that denotes the empty set.
An explicit, unique, sorted list of integers in the set, which is maintained up to a fixed cardinality.
A 'lazy', map-based implementation of HyperLogLog, a probabilistic set data structure. Only stores the indices and values of non-zero registers in a map, until the number of non-zero registers exceeds a fixed cardinality.
A fully-materialized, list-based implementation of HyperLogLog. Explicitly stores the value of every register in a list ordered by register index.
Our motivation for augmenting the original HLL algorithm went something like this:
regwidth * 2^log2m bits to store.log2m = 11 and regwidth = 5, it requires 10,240 bits or 1,280 bytes.The first addition to the original HLL algorithm came from realizing that 1,280 bytes is the size of 160 64-bit integers. So, if we wanted more accuracy at low cardinalities, we could just keep an explicit set of the inputs as a sorted list of 64-bit integers until we hit the 161st distinct value. This would give us the true representation of the distinct values in the stream while requiring the same amount of memory. (This is the EXPLICIT algorithm.)
The second came from the realization that we didn't need to store registers whose value was zero. We could simply represent the set of registers that had non-zero values as a map from index to values. This map is stored as a list of index-value pairs that are bit-packed "short words" of length log2m + regwidth. (This is the SPARSE algorithm.)
Combining these two augmentations, we get a "promotion hierarchy" that allows the algorithm to be tuned for better accuracy, memory, or performance.
Initializing and storing a new hll object will simply allocate a small sentinel value symbolizing the empty set (EMPTY). When you add the first few values, a sorted list of unique integers is stored in an EXPLICIT set. When you wish to cease trading off accuracy for memory, the values in the sorted list are "promoted" to a SPARSE map-based HyperLogLog structure. Finally, when there are enough registers, the map-based HLL will be converted to a bit-packed FULL HLL structure.
Empirically, the insertion rate of EMPTY, EXPLICIT, and SPARSE representations is measured in 200k/s - 300k/s range, while the throughput of the FULL representation is in the millions of inserts per second on relatively new hardware ('10 Xeon).
Naturally, the cardinality estimates of the EMPTY and EXPLICIT representations is exact, while the SPARSE and FULL representations' accuracies are governed by the guarantees provided by the original HLL algorithm.
--- Make a dummy table CREATE TABLE helloworld ( id integer, set hll ); --- Insert an empty HLL INSERT INTO helloworld(id, set) VALUES (1, hll_empty()); --- Add a hashed integer to the HLL UPDATE helloworld SET set = hll_add(set, hll_hash_integer(12345)) WHERE id = 1; --- Or add a hashed string to the HLL UPDATE helloworld SET set = hll_add(set, hll_hash_text('hello world')) WHERE id = 1; --- Get the cardinality of the HLL SELECT hll_cardinality(set) FROM helloworld WHERE id = 1;
Now with the silly stuff out of the way, here's a more realistic use case.
Let's assume I've got a fact table that records users' visits to my site, what they did, and where they came from. It's got hundreds of millions of rows. Table scans take minutes (or at least lots and lots of seconds.)
CREATE TABLE facts ( date date, user_id integer, activity_type smallint, referrer varchar(255) );
I'd really like a quick (milliseconds) idea of how many unique users are visiting per day for my dashboard. No problem, let's set up an aggregate table:
-- Create the destination table CREATE TABLE daily_uniques ( date date UNIQUE, users hll ); -- Fill it with the aggregated unique statistics INSERT INTO daily_uniques(date, users) SELECT date, hll_add_agg(hll_hash_integer(user_id)) FROM facts GROUP BY 1;
We're first hashing the user_id, then aggregating those hashed values into one hll per day. Now we can ask for the cardinality of the hll for each day:
SELECT date, hll_cardinality(users) FROM daily_uniques;
You're probably thinking, "But I could have done this with COUNT DISTINCT!" And you're right, you could have. But then you only ever answer a single question: "How many unique users did I see each day?"
What if you wanted to this week's uniques?
SELECT hll_cardinality(hll_union_agg(users)) FROM daily_uniques WHERE date >= '2012-01-02'::date AND date <= '2012-01-08'::date;
Or the monthly uniques for this year?
SELECT EXTRACT(MONTH FROM date) AS month, hll_cardinality(hll_union_agg(users)) FROM daily_uniques WHERE date >= '2012-01-01' AND date < '2013-01-01' GROUP BY 1;
Or how about a sliding window of uniques over the past 6 days?
SELECT date, #hll_union_agg(users) OVER seven_days FROM daily_uniques WINDOW seven_days AS (ORDER BY date ASC ROWS 6 PRECEDING);
Or the number of uniques you saw yesterday that you didn't see today?
SELECT date, (#hll_union_agg(users) OVER two_days) - #users AS lost_uniques FROM daily_uniques WINDOW two_days AS (ORDER BY date ASC ROWS 1 PRECEDING);
These are just a few examples of the types of queries that would return in milliseconds in an hll world from a single aggregate, but would require either completely separate pre-built aggregates or self-joins or generate_series trickery in a COUNT DISTINCT world.
We've added a few operators to make using hlls less cumbersome/verbose. They're simple aliases for the most commonly used functions.
| Function | Operator | Example |
|---|---|---|
hll_add |
|| |
hll_add(users, hll_hash_integer(123))or users || hll_hash_integer(123)or hll_hash_integer(123) || users
|
hll_cardinality |
# |
hll_cardinality(users)or #users
|
hll_union |
|| |
hll_union(male_users, female_users)or male_users || female_usersor female_users || male_users
|
You'll notice that all the calls to hll_add or || involve wrapping the input value in a hll_hash_[type] call; it's absolutely crucial that you hash your input values to hll structures. For more on this, see the section below titled 'The Importance of Hashing'.
The hashing functions we've made available are listed below:
| Function | Input | Example |
|---|---|---|
hll_hash_boolean |
boolean |
hll_hash_boolean(TRUE)or hll_hash_boolean(TRUE, 123/*hash seed*/)
|
hll_hash_smallint |
smallint |
hll_hash_smallint(4)or hll_hash_smallint(4, 123/*hash seed*/)
|
hll_hash_integer |
integer |
hll_hash_integer(21474836)or hll_hash_integer(21474836, 123/*hash seed*/)
|
hll_hash_bigint |
bigint |
hll_hash_bigint(223372036854775808)or hll_hash_bigint(223372036854775808, 123/*hash seed*/)
|
hll_hash_bytea |
bytea |
hll_hash_bytea(E'\\xDEADBEEF')or hll_hash_bytea(E'\\xDEADBEEF', 123/*hash seed*/)
|
hll_hash_text |
text |
hll_hash_text('foobar')or hll_hash_text('foobar', 123/*hash seed*/)
|
hll_hash_any |
any |
hll_hash_any(anyval)or hll_hash_any(anyval, 123/*hash seed*/)
|
NOTE: hll_hash_any dynamically dispatches to the appropriate type-specific function, which makes it slower than the type-specific ones it wraps. Use it only when the input type is not known beforehand.
So what if you don't want to hash your input?
postgres=# select 1234 || hll_empty();
ERROR: operator does not exist: integer || hll
LINE 1: select 1234 || hll_empty();
^
HINT: No operator matches the given name and argument type(s). You might need to add explicit type casts.
Not pretty. Since hashing is such a crucial part of the accuracy of HyperLogLog, we decided to "enforce" this at a type level. You can only add hll_hashval typed things to a hll, which is what the hll_hash_[type] functions return. You can simply cast integer values to hll_hashval to add them without hashing, like so:
postgres=# select 1234::hll_hashval || hll_empty();
?column?
--------------------------
\x128c4900000000000004d2
(1 row)
If you want to create a hll from a table or result set, use hll_add_agg. The naming here isn't particularly creative: it's an aggregate function that adds the values to an empty hll.
SELECT date, hll_add_agg(hll_hash_integer(user_id)) FROM facts GROUP BY 1;
The above example will give you a hll for each date that contains each day's users.
If you want to summarize a list of hlls that you already have stored into a single hll, use hll_union_agg. Again: it's an aggregate function that unions the values into an empty hll.
SELECT EXTRACT(MONTH FROM date), hll_cardinality(hll_union_agg(users)) FROM daily_uniques GROUP BY 1;
Sliding windows are another prime example of the power of hlls. Doing sliding window unique counting typically involves some generate_series trickery, but it's quite simple with the hlls you've already computed for your roll-ups.
SELECT date, #hll_union_agg(users) OVER seven_days FROM daily_uniques WINDOW seven_days AS (ORDER BY date ASC ROWS 6 PRECEDING);
The log-base-2 of the number of registers used in the HyperLogLog algorithm. Must be at least 4 and at most 31. This parameter tunes the accuracy of the HyperLogLog structure. The relative error is given by the expression ±1.04/√(2log2m). Note that increasing log2m by 1 doubles the required storage for the hll.
The number of bits used per register in the HyperLogLog algorithm. Must be at least 1 and at most 8. This parameter, in conjunction with log2m, tunes the maximum cardinality of the set whose cardinality can be estimated. For clarity, we've provided a table of regwidths and log2ms and the approximate maximum cardinality that can be estimated with those parameters. (The size of the resulting structure is provided as well.)
logm2 | regwidth=1 | regwidth=2 | regwidth=3 | regwidth=4 | regwidth=5 | regwidth=6 |
|---|---|---|---|---|---|---|
| 10 | 7.4e+02 128B | 3.0e+03 256B | 4.7e+04 384B | 1.2e+07 512B | 7.9e+11 640B | 3.4e+21 768B |
| 11 | 1.5e+03 256B | 5.9e+03 512B | 9.5e+04 768B | 2.4e+07 1.0KB | 1.6e+12 1.2KB | 6.8e+21 1.5KB |
| 12 | 3.0e+03 512B | 1.2e+04 1.0KB | 1.9e+05 1.5KB | 4.8e+07 2.0KB | 3.2e+12 2.5KB | 1.4e+22 3KB |
| 13 | 5.9e+03 1.0KB | 2.4e+04 2.0KB | 3.8e+05 3KB | 9.7e+07 4KB | 6.3e+12 5KB | 2.7e+22 6KB |
| 14 | 1.2e+04 2.0KB | 4.7e+04 4KB | 7.6e+05 6KB | 1.9e+08 8KB | 1.3e+13 10KB | 5.4e+22 12KB |
| 15 | 2.4e+04 4KB | 9.5e+04 8KB | 1.5e+06 12KB | 3.9e+08 16KB | 2.5e+13 20KB | 1.1e+23 24KB |
| 16 | 4.7e+04 8KB | 1.9e+05 16KB | 3.0e+06 24KB | 7.7e+08 32KB | 5.1e+13 40KB | 2.2e+23 48KB |
| 17 | 9.5e+04 16KB | 3.8e+05 32KB | 6.0e+06 48KB | 1.5e+09 64KB | 1.0e+14 80KB | 4.4e+23 96KB |
Tunes when the EXPLICIT to SPARSE promotion occurs, based on the set's cardinality. It is also possible to turn off the use of the EXPLICIT representation entirely. If the EXPLICIT representation is turned off, the EMPTY set is promoted directly to SPARSE. Must be -1, 0, or 1-18 inclusive.
expthresh value | Meaning |
|---|---|
| -1 | Promote at whatever cutoff makes sense for optimal memory usage. ('auto' mode) |
| 0 | Skip EXPLICIT representation in hierarchy. |
| 1-18 | Promote at 2expthresh - 1 cardinality |
You can choose the EXPLICIT cutoff such that it will end up taking more memory than a FULL hll representation. This is allowed for those cases where perfect precision and accuracy are required up through some pre-set cardinality range, after which estimates of the cardinality are sufficient.
NOTE: The restriction of expthresh to a maximum value of 18 (for the third case in the table above) is an implementation tradeoff between performance and general appeal. If you want access to higher expthresh values, let us know in the Issues section and we'll see what we can do.
Enables or disables the SPARSE representation. If both the EXPLICIT and SPARSE representations are disabled, an EMPTY set will be promoted directly to a FULL set. If SPARSE is enabled, the promotion from SPARSE to FULL will occur when the internal SPARSE representation's memory footprint would exceed that of the FULL version. Must be either 0 (zero) or 1 (one). Zero means disabled, one is enabled.
In all the examples above, the type hll has been used without adornment. This is a shortcut. In reality, the type can have up to 4 arguments. The defaults are shown as well.
hll(log2m=11, regwidth=5, expthresh=-1, sparseon=1)
You can provide any prefix of the full list of arguments. The named arguments are the same as those mentioned in the 'Explanation of Parameters' section, above. If you'd like to change these (they're hardcoded in the source) look in hll.c for DEFAULT_LOG2M and that should get you there pretty quickly.
hll_print is your friend! It will show you all the parameters of the hll as well as nicely-formatted representation of the contents.
This module has been tested on:
If you end up needing to change something to get this running on another system, send us the diff and we'll try to work it in!
Note: At the moment postgresql-hll does not work with 32bit systems.
Specify versions:
export VER=2.21
export PGSHRT=11
Make sure Makefile points to the correct pg_config for the specified version, since rpmbuild doesn't respect env variables:
PG_CONFIG = /usr/pgsql-11/bin/pg_config
Create a tarball from the source tree:
tar cvfz postgresql${PGSHRT}-hll-${VER}.tar.gz postgresql-hll \
--transform="s/postgresql-hll/postgresql${PGSHRT}-hll/g"
Execute rpmbuild:
rpmbuild -tb postgresql${PGSHRT}-hll-${VER}.tar.gz
Install RPM:
rpm -Uv rpmbuild/RPMS/x86_64/postgresql11-hll-2.21.x86_64.rpm
And if you want the debugging build:
rpm -Uv rpmbuild/RPMS/x86_64/postgresql11-hll-debuginfo-2.21.x86_64.rpm
If you aren't using the pg_config on your path (or don't have it on your path), specify the correct one to build against:
PG_CONFIG=/usr/pgsql-9.11/bin/pg_config make
Or to build with what's on your path, just:
make
If you wish to build with an alternate C/C++ compiler, say gcc, then you can specify it like so:
make CC=gcc CXX=gcc
(This may be useful if an older clang is the default compiler.)
Or for the debug build:
DEBUG=1 make
Then install:
sudo make install
You need postgresql's libraries and headers for C lang available in order to
install from source. If you don't have these, you may encounter No such file or directory errors and will not be able to run the make step above. This
step may depend on your OS but to install them on Debian variants use you may
use:
sudo apt-get install postgresql-server-dev-<YOUR_VERSION>
After you've built and installed the artifacts, fire up psql:
postgres=# CREATE EXTENSION hll;
CREATE EXTENSION
And then just verify it's there:
postgres=# \dx
List of installed extensions
Name | Version | Schema | Description
---------+---------+------------+-----------------------------------
hll | 2.21 | public | type for storing hyperloglog data
plpgsql | 1.0 | pg_catalog | PL/pgSQL procedural language
(2 rows)
Start a PostgreSQL server running in default port:
initdb -D data
pg_ctl -D data -l logfile -c start
Run the tests:
make installcheck
In brief, it is absolutely crucial to hash inputs to the hll. A close approximation of uniform randomness in the inputs ensures that the error guarantees laid out in the original paper hold. In fact, the canonical C++ implementation of MurmurHash 3 is provided in this module to facilitate this input requirement. We've empirically determined that MurmurHash 3 is an excellent and fast hash function to use in conjunction with the hll module.
The seed to the hash call must remain constant for all inputs to a given hll. Similarly, if you plan to compute the union of two hlls, the input values must have been hashed using the same seed.
For a good overview of the importance of hashing and hash functions when using probabilistic algorithms as well as an analysis of MurmurHash 3, see these four blog posts:
hlls have the useful property that the union of any number of hlls is equal to the hll that would have been populated by playing back all inputs to those N hlls into a single hll. Colloquially, we say that hlls have "lossless" unions because the same cardinality error guarantees that apply to a single hll apply to a union of hlls. This property combined with Postgres' aggregation functions (sliding window and so on) can power some pretty impressive analytics, like the number of unique visitors in a 30-day sliding window over the course of a year. See the hll_union_agg and hll_union functions.
Using the inclusion-exclusion principle and the union function, you can also estimate the intersection of sets represented by hlls. Note, however, that error is proportional to the union of the two hlls, while the result can be significantly smaller than the union, leading to disproportionately large error relative to the actual intersection cardinality. For instance, if one hll has a cardinality of 1 billion, while the other has a cardinality of 10 million, with an overlap of 5 million, the intersection cardinality can easily be dwarfed by even a 1% error estimate in the larger hlls cardinality.
For more information on hll intersections, see this blog post.
hlls are stored in the database as byte arrays, which are packed according to the storage specification, v1.0.0.
It is a pretty trivial task to export these to and from Postgres and other applications by implementing a serializer/deserializer. We have provided several packages that provide such tools:
Original developers of postgresql-hll are Ken Sedgwick, Timon Karnezos, and Rob Grzywinski.